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Protein Complex Estimates Using AP-MS Data

Scholtens, D. and Gentleman, R.
Making Sense of High Throughput Protein-Protein Interaction Data


Publicly available affinity purification - mass spectrometry (AP-MS) data:
TAP data
Gavin, et al. Functional organization of the yeast proteome by systematic analysis of protein complexes, Nature 415 (2002) 141-147.
HMS-PCI data
Ho, et al. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry, Nature 415 (2002) 180-183.
  • TAP data complex estimates
  • Multi-Bait-Multi-Edge (MBME) Complexes (260 total): (pdf)
  • Single-Bait-Multi-Hit (SBMH) Complexes (325 total): (pdf)
  • Unreciprocated Bait-Bait (UnRBB) Complexes (123 total): (pdf)
  • HMS-PCI data complex estimates
  • Multi-Bait-Multi-Edge (MBME) Complexes (242 total): (pdf)
  • Single-Bait-Multi-Hit (SBMH) Complexes (437 total): (pdf)
  • Unreciprocated Bait-Bait (UnRBB) Complexes (329 total): (pdf)



Last updated: December 23, 2003

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